HL_7ZPQ_081

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

7ZPQ|1|5|C|1762, 7ZPQ|1|5|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_081 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.4017

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

7ZPQ|1|5|A|1760
7ZPQ|1|5|C|1761
7ZPQ|1|5|C|1762
7ZPQ|1|5|U|1763
7ZPQ|1|5|U|1764
7ZPQ|1|5|U|1765

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BQ

60S ribosomal protein L19-A