HL_7ZPQ_104

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_104 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0983

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZPQ|1|5|C|2840
7ZPQ|1|5|G|2841
7ZPQ|1|5|U|2842
7ZPQ|1|5|U|2843
7ZPQ|1|5|C|2844
7ZPQ|1|5|A|2845
7ZPQ|1|5|U|2846
7ZPQ|1|5|A|2847
7ZPQ|1|5|G|2848

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BI

RPL10 isoform 1

Chain Bl

60S ribosomal protein L40-A