HL_7ZPQ_105

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_105 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0945

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7ZPQ|1|5|A|2897
7ZPQ|1|5|G|2898
7ZPQ|1|5|C|2899
7ZPQ|1|5|A|2900
7ZPQ|1|5|G|2901
7ZPQ|1|5|A|2902
7ZPQ|1|5|A|2903
7ZPQ|1|5|U|2904

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain Bl

60S ribosomal protein L40-A