HL_7ZPQ_116

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCUUCGAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZPQ_116 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.1388

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

7ZPQ|1|6|G|31
7ZPQ|1|6|C|32
7ZPQ|1|6|U|33
7ZPQ|1|6|U|34
7ZPQ|1|6|C|35
7ZPQ|1|6|G|36
7ZPQ|1|6|A|37
7ZPQ|1|6|A|38
7ZPQ|1|6|C|39

Current chains

Chain 6

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AQ

40S ribosomal protein S16-A