HL_7ZQ5_056

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

7ZQ5|1|b|A|2268, 7ZQ5|1|b|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZQ5_056 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.1117

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|C|2264
7ZQ5|1|b|U|2265
7ZQ5|1|b|A|2266
7ZQ5|1|b|A|2267
7ZQ5|1|b|A|2268
7ZQ5|1|b|G|2269
7ZQ5|1|b|A|2270
7ZQ5|1|b|G|2271
7ZQ5|1|b|U|2272
7ZQ5|1|b|A|2273
7ZQ5|1|b|A|2274
7ZQ5|1|b|C|2275
7ZQ5|1|b|G|2276

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain y

50S ribosomal protein L27