HL_7ZQ5_068

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7ZQ5|1|b|G|2751, 7ZQ5|1|b|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZQ5_068 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0961

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|C|2745
7ZQ5|1|b|U|2746
7ZQ5|1|b|G|2747
7ZQ5|1|b|A|2748
7ZQ5|1|b|A|2749
7ZQ5|1|b|A|2750
7ZQ5|1|b|G|2751
7ZQ5|1|b|C|2752
7ZQ5|1|b|A|2753
7ZQ5|1|b|U|2754
7ZQ5|1|b|C|2755
7ZQ5|1|b|U|2756
7ZQ5|1|b|A|2757
7ZQ5|1|b|A|2758
7ZQ5|1|b|G|2759

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6

Chain j

50S ribosomal protein L13