3D structure

PDB id
7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
7ZQ6|1|b|G|2751, 7ZQ6|1|b|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZQ6_071 not in the Motif Atlas
Geometric match to HL_5J7L_199
Geometric discrepancy: 0.0573
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

7ZQ6|1|b|C|2745
7ZQ6|1|b|U|2746
7ZQ6|1|b|G|2747
7ZQ6|1|b|A|2748
7ZQ6|1|b|A|2749
7ZQ6|1|b|A|2750
7ZQ6|1|b|G|2751
7ZQ6|1|b|C|2752
7ZQ6|1|b|A|2753
7ZQ6|1|b|U|2754
7ZQ6|1|b|C|2755
7ZQ6|1|b|U|2756
7ZQ6|1|b|A|2757
7ZQ6|1|b|A|2758
7ZQ6|1|b|G|2759

Current chains

Chain b
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain g
50S ribosomal protein L6
Chain j
50S ribosomal protein L13

Coloring options:


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