HL_7ZRS_062

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7ZRS|1|5|U|880, 7ZRS|1|5|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZRS_062 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0714

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7ZRS|1|5|A|877
7ZRS|1|5|C|878
7ZRS|1|5|G|879
7ZRS|1|5|U|880
7ZRS|1|5|G|881
7ZRS|1|5|C|882
7ZRS|1|5|A|883
7ZRS|1|5|A|884
7ZRS|1|5|A|885
7ZRS|1|5|U|886

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L17-A

Chain Bi

60S ribosomal protein L37-A