3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUGUAAAAC
Length
9 nucleotides
Bulged bases
7ZS5|1|1|U|689, 7ZS5|1|1|A|691
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7ZS5_016 not in the Motif Atlas
Homologous match to HL_8C3A_015
Geometric discrepancy: 0.2837
The information below is about HL_8C3A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53971.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7ZS5|1|1|G|686
7ZS5|1|1|U|687
7ZS5|1|1|G|688
7ZS5|1|1|U|689
7ZS5|1|1|A|690
7ZS5|1|1|A|691
7ZS5|1|1|A|692
7ZS5|1|1|A|693
7ZS5|1|1|C|694

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain BE
60S ribosomal protein L4-A
Chain BM
60S ribosomal protein L13-A
Chain BO
60S ribosomal protein L15-A
Chain BZ
60S ribosomal protein L26-A

Coloring options:


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