HL_7ZS5_028

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7ZS5|1|1|U|1241, 7ZS5|1|1|G|1242, 7ZS5|1|1|G|1243, 7ZS5|1|1|A|1244, 7ZS5|1|1|A|1245, 7ZS5|1|1|C|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZS5_028 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.4057

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7ZS5|1|1|C|1239
7ZS5|1|1|A|1240
7ZS5|1|1|U|1241
7ZS5|1|1|G|1242
7ZS5|1|1|G|1243
7ZS5|1|1|A|1244
7ZS5|1|1|A|1245
7ZS5|1|1|G|1246
7ZS5|1|1|U|1247
7ZS5|1|1|C|1248
7ZS5|1|1|G|1249

Current chains

Chain 1

25S ribosomal RNA

Nearby chains