HL_7ZTA_008

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7ZTA|1|16S1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZTA_008 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.083

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ZTA|1|16S1|G|259
7ZTA|1|16S1|G|260
7ZTA|1|16S1|U|261
7ZTA|1|16S1|A|262
7ZTA|1|16S1|A|263
7ZTA|1|16S1|C|264
7ZTA|1|16S1|G|265
7ZTA|1|16S1|G|266
7ZTA|1|16S1|C|267

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S171

30S ribosomal protein S17

Chain S201

30S ribosomal protein S20