HL_7ZTA_070

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

7ZTA|1|23S1|A|1453, 7ZTA|1|23S1|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZTA_070 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0847

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7ZTA|1|23S1|C|1451
7ZTA|1|23S1|G|1452
7ZTA|1|23S1|A|1453
7ZTA|1|23S1|C|1454
7ZTA|1|23S1|G|1455
7ZTA|1|23S1|G|1456
7ZTA|1|23S1|U|1457
7ZTA|1|23S1|U|1458
7ZTA|1|23S1|G|1459

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L171

50S ribosomal protein L17