HL_7ZTA_116

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7ZTA|1|23S1|U|958, 7ZTA|1|23S1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZTA_116 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0765

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ZTA|1|23S1|PSU|955
7ZTA|1|23S1|G|956
7ZTA|1|23S1|C|957
7ZTA|1|23S1|U|958
7ZTA|1|23S1|A|959
7ZTA|1|23S1|A|960
7ZTA|1|23S1|C|961
7ZTA|1|23S1|G|962

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain 05S1

5S ribosomal RNA; 5S rRNA

Chain L161

50S ribosomal protein L16