HL_7ZUW_021

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUW_021 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.167

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7ZUW|1|2|A|900
7ZUW|1|2|G|901
7ZUW|1|2|G|902
7ZUW|1|2|U|903
7ZUW|1|2|G|904
7ZUW|1|2|A|905
7ZUW|1|2|A|906
7ZUW|1|2|A|907
7ZUW|1|2|U|908
7ZUW|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S1-A

Chain AF

Rps5p

Chain AO

40S ribosomal protein S14-B