HL_7ZUX_020

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4699

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7ZUX|1|2|U|828
7ZUX|1|2|A|829
7ZUX|1|2|U|830
7ZUX|1|2|U|831
7ZUX|1|2|U|832
7ZUX|1|2|U|833
7ZUX|1|2|G|834
7ZUX|1|2|U|835
7ZUX|1|2|U|836
7ZUX|1|2|G|837
7ZUX|1|2|G|838
7ZUX|1|2|U|839
7ZUX|1|2|U|840
7ZUX|1|2|U|841
7ZUX|1|2|C|842
7ZUX|1|2|U|843
7ZUX|1|2|A|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DL

40S ribosomal protein S11-A