HL_7ZUX_028

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

7ZUX|1|2|G|1243, 7ZUX|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZUX_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2513

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7ZUX|1|2|A|1238
7ZUX|1|2|U|1239
7ZUX|1|2|U|1240
7ZUX|1|2|G|1241
7ZUX|1|2|A|1242
7ZUX|1|2|G|1243
7ZUX|1|2|A|1244
7ZUX|1|2|G|1245
7ZUX|1|2|C|1246
7ZUX|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DP

40S ribosomal protein S15

Chain Dd

40S ribosomal protein S29-A

Chain Df

Ubiquitin