HL_7ZW0_085

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7ZW0|1|LA|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ZW0_085 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1246

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7ZW0|1|LA|G|2253
7ZW0|1|LA|U|2254
7ZW0|1|LA|A|2255
7ZW0|1|LA|A|2256
7ZW0|1|LA|C|2257
7ZW0|1|LA|U|2258
7ZW0|1|LA|A|2259
7ZW0|1|LA|U|2260
7ZW0|1|LA|G|2261
7ZW0|1|LA|A|2262
7ZW0|1|LA|C|2263

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain sl

Transfer RNA; tRNA

Chain sm

mRNA