HL_8A3D_024

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8A3D|1|A|U|1596, 8A3D|1|A|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_024 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0634

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8A3D|1|A|A|1593
8A3D|1|A|C|1594
8A3D|1|A|G|1595
8A3D|1|A|U|1596
8A3D|1|A|G|1597
8A3D|1|A|C|1598
8A3D|1|A|A|1599
8A3D|1|A|A|1600
8A3D|1|A|A|1601
8A3D|1|A|U|1602

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain J

60S ribosomal protein L17

Chain d

60S ribosomal protein L37