HL_8A3D_065

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8A3D|1|A|U|4419, 8A3D|1|A|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A3D_065 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.4521

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8A3D|1|A|C|4417
8A3D|1|A|G|4418
8A3D|1|A|U|4419
8A3D|1|A|PSU|4420
8A3D|1|A|C|4421
8A3D|1|A|A|4422
8A3D|1|A|PSU|4423
8A3D|1|A|A|4424
8A3D|1|A|G|4425

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain g

Ubiquitin-60S ribosomal protein L40

Chain p

60S ribosomal protein L10