HL_8A57_013

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

8A57|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A57_013 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.0887

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8A57|1|A|A|428
8A57|1|A|C|429
8A57|1|A|A|430
8A57|1|A|C|431
8A57|1|A|G|432
8A57|1|A|U|433
8A57|1|A|G|434
8A57|1|A|A|435
8A57|1|A|A|436
8A57|1|A|A|437
8A57|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28