HL_8A5I_053

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8A5I|1|A|A|2301, 8A5I|1|A|C|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_053 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.0653

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8A5I|1|A|C|2297
8A5I|1|A|U|2298
8A5I|1|A|A|2299
8A5I|1|A|A|2300
8A5I|1|A|A|2301
8A5I|1|A|G|2302
8A5I|1|A|A|2303
8A5I|1|A|G|2304
8A5I|1|A|U|2305
8A5I|1|A|A|2306
8A5I|1|A|A|2307
8A5I|1|A|C|2308
8A5I|1|A|G|2309

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27