HL_8A5I_065

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8A5I|1|A|G|2784, 8A5I|1|A|C|2788

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_065 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.075

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8A5I|1|A|C|2778
8A5I|1|A|U|2779
8A5I|1|A|G|2780
8A5I|1|A|A|2781
8A5I|1|A|A|2782
8A5I|1|A|A|2783
8A5I|1|A|G|2784
8A5I|1|A|C|2785
8A5I|1|A|A|2786
8A5I|1|A|U|2787
8A5I|1|A|C|2788
8A5I|1|A|U|2789
8A5I|1|A|A|2790
8A5I|1|A|A|2791
8A5I|1|A|G|2792

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13