HL_8A5I_070

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCUUC

Length

5 nucleotides

Bulged bases

8A5I|1|B|C|85, 8A5I|1|B|U|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8A5I_070 not in the Motif Atlas

Geometric match to HL_7RQB_009

Geometric discrepancy: 0.2045

The information below is about HL_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89098.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8A5I|1|B|G|84
8A5I|1|B|C|85
8A5I|1|B|U|86
8A5I|1|B|U|87
8A5I|1|B|C|88

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain P

50S ribosomal protein L16