HL_8AGT_020
3D structure
- PDB id
- 8AGT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8AGT|1|f|U|879, 8AGT|1|f|A|883
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGT_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0612
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8AGT|1|f|A|876
8AGT|1|f|C|877
8AGT|1|f|G|878
8AGT|1|f|U|879
8AGT|1|f|G|880
8AGT|1|f|C|881
8AGT|1|f|A|882
8AGT|1|f|A|883
8AGT|1|f|A|884
8AGT|1|f|U|885
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 1
- CAT tailed nascent peptide
- Chain C
- 60S ribosomal protein L17-A
- Chain W
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L3
Coloring options: