HL_8AGT_024

3D structure

PDB id

8AGT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state F

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8AGT|1|f|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGT_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1046

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8AGT|1|f|C|1076
8AGT|1|f|U|1077
8AGT|1|f|U|1078
8AGT|1|f|A|1079
8AGT|1|f|A|1080
8AGT|1|f|U|1081
8AGT|1|f|U|1082
8AGT|1|f|G|1083

Current chains

Chain f

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L21-A

Chain O

60S ribosomal protein L29

Chain m

60S ribosomal protein L5