3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUGAGAAUC
Length
9 nucleotides
Bulged bases
8AGU|1|f|G|218, 8AGU|1|f|A|219, 8AGU|1|f|G|220
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8AGU_007 not in the Motif Atlas
Homologous match to HL_8C3A_007
Geometric discrepancy: 0.0559
The information below is about HL_8C3A_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_08002.12
Basepair signature
cWW-cWW-F-tWH
Number of instances in this motif group
16

Unit IDs

8AGU|1|f|G|216
8AGU|1|f|U|217
8AGU|1|f|G|218
8AGU|1|f|A|219
8AGU|1|f|G|220
8AGU|1|f|A|221
8AGU|1|f|A|222
8AGU|1|f|U|223
8AGU|1|f|C|224

Current chains

Chain f
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L26-A
Chain i
5.8S ribosomal RNA; 5.8S rRNA
Chain l
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:


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