HL_8AGU_042

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8AGU|1|f|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AGU_042 not in the Motif Atlas

Homologous match to HL_5TBW_042

Geometric discrepancy: 0.0864

The information below is about HL_5TBW_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8AGU|1|f|U|1862
8AGU|1|f|G|1863
8AGU|1|f|A|1864
8AGU|1|f|A|1865
8AGU|1|f|C|1866
8AGU|1|f|A|1867
8AGU|1|f|G|1868

Current chains

Chain f

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L19-A