HL_8AGU_084
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGU_084 not in the Motif Atlas
- Homologous match to HL_8P9A_186
- Geometric discrepancy: 0.0668
- The information below is about HL_8P9A_186
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8AGU|1|i|C|47
8AGU|1|i|A|48
8AGU|1|i|G|49
8AGU|1|i|C|50
8AGU|1|i|G|51
8AGU|1|i|A|52
8AGU|1|i|A|53
8AGU|1|i|A|54
8AGU|1|i|U|55
8AGU|1|i|G|56
Current chains
- Chain i
- 5.8S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L25
- Chain U
- 60S ribosomal protein L35-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: