HL_8AGV_075
3D structure
- PDB id
- 8AGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state H
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8AGV|1|i|C|84, 8AGV|1|i|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGV_075 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.165
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8AGV|1|i|U|69
8AGV|1|i|G|70
8AGV|1|i|A|71
8AGV|1|i|A|72
8AGV|1|i|U|73
8AGV|1|i|U|74
8AGV|1|i|G|75
8AGV|1|i|C|76
8AGV|1|i|A|77
8AGV|1|i|G|78
8AGV|1|i|A|79
8AGV|1|i|A|80
8AGV|1|i|U|81
8AGV|1|i|U|82
8AGV|1|i|C|83
8AGV|1|i|C|84
8AGV|1|i|G|85
8AGV|1|i|U|86
8AGV|1|i|G|87
8AGV|1|i|A|88
8AGV|1|i|A|89
Current chains
- Chain i
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L26-A
- Chain U
- 60S ribosomal protein L35-A
- Chain Y
- 60S ribosomal protein L39
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: