HL_8AGX_024
3D structure
- PDB id
- 8AGX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the IN position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUUAAUUG
- Length
- 8 nucleotides
- Bulged bases
- 8AGX|1|f|U|1081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AGX_024 not in the Motif Atlas
- Geometric match to HL_5TBW_024
- Geometric discrepancy: 0.1045
- The information below is about HL_5TBW_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8AGX|1|f|C|1076
8AGX|1|f|U|1077
8AGX|1|f|U|1078
8AGX|1|f|A|1079
8AGX|1|f|A|1080
8AGX|1|f|U|1081
8AGX|1|f|U|1082
8AGX|1|f|G|1083
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L21-A
- Chain O
- 60S ribosomal protein L29
- Chain m
- 60S ribosomal protein L5
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