HL_8AKN_017
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8AKN|1|B|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8AKN_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0632
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8AKN|1|B|G|786
8AKN|1|B|A|787
8AKN|1|B|U|788
8AKN|1|B|U|789
8AKN|1|B|A|790
8AKN|1|B|G|791
8AKN|1|B|A|792
8AKN|1|B|U|793
8AKN|1|B|A|794
8AKN|1|B|C|795
8AKN|1|B|C|796
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S11
- Chain V
- 30S ribosomal protein S21
- Chain X
- Transfer RNA; tRNA
- Chain Y
- mRNA
- Chain Z
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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