HL_8AM9_077

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

8AM9|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8AM9_077 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0926

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8AM9|1|a|A|1630
8AM9|1|a|G|1631
8AM9|1|a|A|1632
8AM9|1|a|G|1633
8AM9|1|a|A|1634
8AM9|1|a|A|1635
8AM9|1|a|U|1636

Current chains

Chain a

23S ribosomal RNA

Nearby chains