HL_8ANA_012

3D structure

PDB id

8ANA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8ANA|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ANA_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0531

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8ANA|1|a|A|382
8ANA|1|a|C|383
8ANA|1|a|A|384
8ANA|1|a|C|385
8ANA|1|a|G|386
8ANA|1|a|U|387
8ANA|1|a|G|388
8ANA|1|a|G|389
8ANA|1|a|U|390
8ANA|1|a|A|391
8ANA|1|a|U|392

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L28