HL_8B2L_004

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUCCG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|131, 8B2L|1|A3|C|133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1804

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8B2L|1|A3|C|130
8B2L|1|A3|U|131
8B2L|1|A3|C|132
8B2L|1|A3|C|133
8B2L|1|A3|G|134

Current chains

Chain A3

25S rRNA

Nearby chains

Chain F3

Ribosomal protein L15

Chain n3

60S ribosomal protein L35-like