HL_8B2L_006

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|G|207, 8B2L|1|A3|A|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1105

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8B2L|1|A3|C|205
8B2L|1|A3|A|206
8B2L|1|A3|G|207
8B2L|1|A3|A|208
8B2L|1|A3|G|209

Current chains

Chain A3

25S rRNA

Nearby chains

Chain m3

uL24 (60S ribosomal protein L26)

Chain s3

uL4 (60S ribosomal protein L4)