HL_8B2L_007

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8B2L|1|A3|G|215, 8B2L|1|A3|A|216, 8B2L|1|A3|G|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1463

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8B2L|1|A3|G|213
8B2L|1|A3|U|214
8B2L|1|A3|G|215
8B2L|1|A3|A|216
8B2L|1|A3|G|217
8B2L|1|A3|A|218
8B2L|1|A3|G|219
8B2L|1|A3|C|220
8B2L|1|A3|C|221

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B3

5.8S ribosomal RNA; 5.8S rRNA

Chain m3

uL24 (60S ribosomal protein L26)

Chain s3

uL4 (60S ribosomal protein L4)