HL_8B2L_008
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UU(PSU)GGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8B2L|1|A3|G|280, 8B2L|1|A3|A|281, 8B2L|1|A3|A|282
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_008 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.3331
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8B2L|1|A3|U|275
8B2L|1|A3|U|276
8B2L|1|A3|PSU|277
8B2L|1|A3|G|278
8B2L|1|A3|G|279
8B2L|1|A3|G|280
8B2L|1|A3|A|281
8B2L|1|A3|A|282
8B2L|1|A3|U|283
8B2L|1|A3|G|284
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain F3
- Ribosomal protein L15
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
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