HL_8B2L_012

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)GACGAGC

Length

9 nucleotides

Bulged bases

8B2L|1|A3|C|467

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_012 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3083

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|463
8B2L|1|A3|PSU|464
8B2L|1|A3|G|465
8B2L|1|A3|A|466
8B2L|1|A3|C|467
8B2L|1|A3|G|468
8B2L|1|A3|A|469
8B2L|1|A3|G|470
8B2L|1|A3|C|471

Current chains

Chain A3

25S rRNA

Nearby chains

Chain N3

eL28 (60S ribosomal protein L28)

Chain q3

60S ribosomal protein L7-4-like

Chain s3

uL4 (60S ribosomal protein L4)