HL_8B2L_024

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|C|969, 8B2L|1|A3|C|971, 8B2L|1|A3|A|972

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.1562

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8B2L|1|A3|C|968
8B2L|1|A3|C|969
8B2L|1|A3|PSU|970
8B2L|1|A3|C|971
8B2L|1|A3|A|972
8B2L|1|A3|G|973

Current chains

Chain A3

25S rRNA

Nearby chains

Chain O3

60S ribosomal protein L29

Chain Z3

60S ribosomal protein L44

Chain f3

uL15 (60S ribosomal protein L27a)