HL_8B2L_028

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_028 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.0767

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B2L|1|A3|G|1159
8B2L|1|A3|G|1160
8B2L|1|A3|A|1161
8B2L|1|A3|U|1162
8B2L|1|A3|G|1163
8B2L|1|A3|A|1164
8B2L|1|A3|A|1165
8B2L|1|A3|C|1166

Current chains

Chain A3

25S rRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain R3

60S ribosomal protein L32-1

Chain S3

eL33 (60S ribosomal protein L35a)

Chain q3

60S ribosomal protein L7-4-like