HL_8B2L_032

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

A(PSU)GAGAA(OMC)U

Length

9 nucleotides

Bulged bases

8B2L|1|A3|A|1479

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_032 not in the Motif Atlas

Geometric match to HL_5TBW_031

Geometric discrepancy: 0.2549

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8B2L|1|A3|A|1473
8B2L|1|A3|PSU|1474
8B2L|1|A3|G|1475
8B2L|1|A3|A|1476
8B2L|1|A3|G|1477
8B2L|1|A3|A|1478
8B2L|1|A3|A|1479
8B2L|1|A3|OMC|1480
8B2L|1|A3|U|1481

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain Q3

eL31 (60S ribosomal protein L31)