HL_8B2L_038

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AG(PSU)UAUCUUUU

Length

11 nucleotides

Bulged bases

8B2L|1|A3|U|1686, 8B2L|1|A3|U|1691

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_038 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3411

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8B2L|1|A3|A|1683
8B2L|1|A3|G|1684
8B2L|1|A3|PSU|1685
8B2L|1|A3|U|1686
8B2L|1|A3|A|1687
8B2L|1|A3|U|1688
8B2L|1|A3|C|1689
8B2L|1|A3|U|1690
8B2L|1|A3|U|1691
8B2L|1|A3|U|1692
8B2L|1|A3|U|1693

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain K3

60S ribosomal protein L22-2-like