HL_8B2L_040

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CACGUCGCG

Length

9 nucleotides

Bulged bases

8B2L|1|A3|C|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_040 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.133

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8B2L|1|A3|C|1764
8B2L|1|A3|A|1765
8B2L|1|A3|C|1766
8B2L|1|A3|G|1767
8B2L|1|A3|U|1768
8B2L|1|A3|C|1769
8B2L|1|A3|G|1770
8B2L|1|A3|C|1771
8B2L|1|A3|G|1772

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain K3

60S ribosomal protein L22-2-like

Chain k3

60S ribosomal protein L23a