HL_8B2L_043

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8B2L|1|A3|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0589

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8B2L|1|A3|C|1929
8B2L|1|A3|U|1930
8B2L|1|A3|U|1931
8B2L|1|A3|C|1932
8B2L|1|A3|G|1933
8B2L|1|A3|G|1934

Current chains

Chain A3

25S rRNA

Nearby chains

Chain a3

60S ribosomal protein L37a

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain p3

60S ribosomal protein L41