HL_8B2L_049

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8B2L|1|A3|C|2260, 8B2L|1|A3|A|2262

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.4474

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8B2L|1|A3|G|2256
8B2L|1|A3|PSU|2257
8B2L|1|A3|A|2258
8B2L|1|A3|A2M|2259
8B2L|1|A3|C|2260
8B2L|1|A3|PSU|2261
8B2L|1|A3|A|2262
8B2L|1|A3|PSU|2263
8B2L|1|A3|G|2264
8B2L|1|A3|A|2265
8B2L|1|A3|C|2266

Current chains

Chain A3

25S rRNA

Nearby chains

Chain B1

mRNA

Chain h1

Small subunit ribosomal RNA; SSU rRNA

Chain i2

Transfer RNA; tRNA