HL_8B2L_055
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUAAAAG(A2M)UAACG
- Length
- 13 nucleotides
- Bulged bases
- 8B2L|1|A3|A|2640, 8B2L|1|A3|C|2647
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_055 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.1035
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8B2L|1|A3|U|2636
8B2L|1|A3|U|2637
8B2L|1|A3|A|2638
8B2L|1|A3|A|2639
8B2L|1|A3|A|2640
8B2L|1|A3|A|2641
8B2L|1|A3|G|2642
8B2L|1|A3|A2M|2643
8B2L|1|A3|U|2644
8B2L|1|A3|A|2645
8B2L|1|A3|A|2646
8B2L|1|A3|C|2647
8B2L|1|A3|G|2648
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain C3
- 5S ribosomal RNA; 5S rRNA
- Chain J3
- 60S ribosomal protein L21-1-like
- Chain O3
- 60S ribosomal protein L29
- Chain g3
- uL16 (60S ribosomal protein L10)
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