HL_8B2L_060
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGGAAUUCG
- Length
- 9 nucleotides
- Bulged bases
- 8B2L|1|A3|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_060 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.1147
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8B2L|1|A3|C|2779
8B2L|1|A3|G|2780
8B2L|1|A3|G|2781
8B2L|1|A3|A|2782
8B2L|1|A3|A|2783
8B2L|1|A3|U|2784
8B2L|1|A3|U|2785
8B2L|1|A3|C|2786
8B2L|1|A3|G|2787
Current chains
- Chain A3
- 25S rRNA
Nearby chains
- Chain D3
- 60S ribosomal protein L13
- Chain G3
- 60S ribosomal protein L18-2-like
- Chain U3
- eL36 (60S ribosomal protein L36)
- Chain Z3
- 60S ribosomal protein L44
- Chain f3
- uL15 (60S ribosomal protein L27a)
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