HL_8B2L_066

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_066 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1142

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8B2L|1|A3|U|3070
8B2L|1|A3|G|3071
8B2L|1|A3|A|3072
8B2L|1|A3|A|3073
8B2L|1|A3|A|3074
8B2L|1|A3|A|3075

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain K3

60S ribosomal protein L22-2-like

Chain Q3

eL31 (60S ribosomal protein L31)