HL_8B2L_068

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

8B2L|1|A3|U|3193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_068 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.3411

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

8B2L|1|A3|C|3190
8B2L|1|A3|U|3191
8B2L|1|A3|U|3192
8B2L|1|A3|U|3193
8B2L|1|A3|G|3194

Current chains

Chain A3

25S rRNA

Nearby chains

Chain u3

uL6 (60S ribosomal protein L9)