HL_8B2L_073
3D structure
- PDB id
- 8B2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAAGUUG
- Length
- 7 nucleotides
- Bulged bases
- 8B2L|1|B3|G|114, 8B2L|1|B3|U|116
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B2L_073 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.1893
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8B2L|1|B3|C|111
8B2L|1|B3|A|112
8B2L|1|B3|A|113
8B2L|1|B3|G|114
8B2L|1|B3|U|115
8B2L|1|B3|U|116
8B2L|1|B3|G|117
Current chains
- Chain B3
- 5.8S rRNA
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain V3
- Ribosomal protein L37
- Chain X3
- 60S ribosomal protein L39-3
- Chain k3
- 60S ribosomal protein L23a
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